| 2000 | Golden Reel Awards | Best Sound Editing in Television Animation — Music[39] | "Mermaid Man and Barnacle Boy" and "Pickles" | Menang |
| Best Sound Editing in Television Animation — Sound[39] | "Karate Choppers" | Menang |
| 2001 | Annie Awards | Outstanding Individual Achievement for Voice Acting by a Female Performer in an Animated Television Production[40] | Mary Jo Catlett as Mrs. Puff
in "No Free Rides" | Nominasi |
| Outstanding Individual Achievement for Voice Acting by a Male Performer in an Animated Television Production[40] | Tom Kenny as SpongeBob SquarePants
in "Wormy" | Nominasi |
| Outstanding Individual Achievement for a Song in an Animated Production[40] | Peter Straus and Paul Tibbitt
for "The Very First Christmas" in "Christmas Who?" | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television Animation — Sound[41] | "Rock Bottom" and "Arrgh" | Menang |
| Best Sound Editing in Television Animation — Music[41] | "Fools in April" and "Neptune's Spatula" | Nominasi |
| 2002 | Primetime Emmy Awards | Outstanding Children's Program[42] | | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television – Animation[43] | "Secret Box" and "Band Geeks" | Menang |
| Best Sound Editing in Television Animation — Music[43] | "Jellyfish Hunter" and "The Fry Cook Games" | Nominasi |
| Television Critics Association Awards | Outstanding Achievement in Children's Programming[44] | | Menang |
| 2003 | Primetime Emmy Awards | Outstanding Animated Program (for Programming Less Than One Hour)[45] | "New Student Starfish" and "Clams" | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television Animation — Music[46] | "Wet Painters" and "Krusty Krab Training Video" | Menang |
| Best Sound Editing in Television Animation[46] | "Nasty Patty" and "Idiot Box" | Menang |
| Kids' Choice Awards | Favorite Cartoon[47] | | Menang |
| 2004 | Primetime Emmy Awards | Outstanding Animated Program (for Programming Less Than One Hour)[48] | "SpongeBob B.C. (Before Comedy)" | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television Animation — Music[49] | "The Great Snail Race" and "Mid-Life Crustacean" | Menang |
| Best Sound Editing in Television Animation — Music[49] | "Mid-Life Crustacean" | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[50] | | Menang |
| Golden Satellite Awards | Best Animated or Mixed Media Feature[51] | The SpongeBob SquarePants Movie | Nominasi |
| 2005 | Annie Awards | Best Animated Television Production[52] | | Menang |
| Best Animated Feature[52] | The SpongeBob SquarePants Movie | Nominasi |
| Directing in a Feature Production[52] | Stephen Hillenburg
for The SpongeBob SquarePants Movie | Nominasi |
| Music in a Feature Production[52] | Gregor Narholz
for The SpongeBob SquarePants Movie | Nominasi |
| Primetime Emmy Awards | Outstanding Animated Program (for Programming Less Than One Hour)[53] | "Fear of a Krabby Patty" and "Shell of a Man" | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television: Animated[54] | "Pranks A Lot" and "SpongeBob Meets the Strangler" | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[55] | | Menang |
| Television Critics Association Awards | Outstanding Achievement in Children's Programming[56] | | Nominasi |
| Golden Trailer Awards | Best Animation/Family[57] | The SpongeBob SquarePants Movie | Nominasi |
| Most Original[57] | Nominasi |
| Young Artist Award | Best Family Feature Film – Animation[58] | The SpongeBob SquarePants Movie | Nominasi |
| 2006 | MTV Russia Movie Awards | Best Animated Film[59] | The SpongeBob SquarePants Movie | Nominasi |
| Annie Awards | Best Writing in an Animated Television Production[60] | C.H. Greenblatt, Paul Tibbitt, Mike Bell, and Tim Hill
for "Fear of a Krabby Patty" | Menang |
| Golden Reel Awards | Best Sound Editing in Television: Animated[61] | "Have You Seen This Snail?" | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[62] | | Menang |
| 2007 | Primetime Emmy Awards | Outstanding Animated Program (for Programming Less Than One Hour)[63] | "Bummer Vacation" and "Wigstruck" | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[64] | | Menang |
| Television Critics Association Awards | Outstanding Achievement in Children's Programming[65] | | Nominasi |
| 2008 | Annie Awards | Best Voice Acting in an Animated Television Production[66] | Tom Kenny as SpongeBob SquarePants
in "Spy Buddies" | Nominasi |
| Golden Reel Awards | Best Sound Editing in Television: Animated[67] | "SpongeHenge" | Menang |
| Kids' Choice Awards | Favorite Cartoon[68] | | Nominasi |
| Primetime Emmy Awards | Outstanding Animated Program (for Programming Less Than One Hour)[69] | "The Inmates of Summer" and "The Two Faces of Squidward" | Nominasi |
| Philippines Kids' Choice Awards | Favorite Cartoon[70] | | Menang |
| 2009 | ASTRA Awards | Favourite International Program[71] | | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[72] | | Menang |
| Indonesia Kids' Choice Awards | Favorite Cartoon[73] | | Menang |
| Annie Awards | Direction in an Animated Television Production or Short-form[74] | Alan Smart
for "Penny Foolish" | Nominasi |
| Golden Reel Awards | Best Sound Editing: Television Animation[75] | "Suction Cup Symphony" | Nominasi |
| Teen Choice Awards | Choice TV Animated Show[76] | | Menang |
| Primetime Emmy Awards | Outstanding Special Class - Short-Format Animated Programs[77] | "Dear Vikings" | Nominasi |
| 2010 | Daytime Emmy Awards | Outstanding Special Class Animated Program[78] | | Menang |
| Outstanding Directing in an Animated Program[78] |
| Nominasi |
| Golden Reel Awards | Best Sound Editing: Television Animation[79] | "SpongeBob vs. The Big One" | Nominasi |
| Annie Awards | Best Home Entertainment Production[80][81] | "SpongeBob vs. The Big One" DVD | Nominasi |
| Best Animated Television Production for Children[80][81] | | Nominasi |
| Best Voice Acting in a Television Production[80][81] | Tom Kenny as SpongeBob SquarePants
in Truth or Square | Menang |
| Kids' Choice Awards | Favorite Cartoon[82] | | Menang |
| Kids' Choice Awards Mexico | Favorite Cartoon[83] | | Nominasi |
| Indonesia Kids' Choice Awards | Favorite Cartoon[84] | | Menang |
| TP de Oro | Best Children and Youth Program[85] | | Menang |
| 2011 | Annie Awards | Best Animated Television Production for Children[86] | | Menang |
| Music in a Television Production[86] | Jeremy Wakefield, Sage Guyton, Nick Carr, Tuck Tucker | Menang |
| ASCAP Film and Television Awards | Top Television Series[87] | | Menang |
| Casting Society of America | Outstanding Achievement in Casting - Television Animation[88] | Sarah Noonan | Menang |
| Kids' Choice Awards | Favorite Cartoon[89] | | Menang |
| Indonesia Kids' Choice Awards | Favorite Cartoon[90] | | Menang |
| Emmy Awards | Outstanding Short-format Animated Program[91] | "That Sinking Feeling" | Nominasi |
| Kids' Choice Awards Argentina | Favorite Cartoon[92][93] | | Nominasi |
| TP de Oro | Best Children and Youth Program[94] | | Menang |
| 2012 | Annie Awards | Writing in a Television Production[95] | Dani Michaeli, Sean Charmatz, Nate Cash, Luke Brookshier, Paul Tibbitt
for "Patrick's Staycation" | Nominasi |
| ASCAP Film and Television Awards | Top Television Series[96] | | Menang |
| Daytime Emmy Awards | Outstanding Children's Animated Program[97][98] | | Nominasi |
| Outstanding Directing in an Animated Program[97][98] | | Nominasi |
| Outstanding Performer in an Animated Program[97][98] | Rodger Bumpass as Squidward Tentacles | Nominasi |
| Outstanding Sound Editing - Animation[97][98] | | Nominasi |
| Producers Guild of America | Children's Program[99] | | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[100] | | Menang |
| Kids' Choice Awards Mexico | Favorite Cartoon[101][102] | | Nominasi |
| Kids' Choice Awards Argentina | Favorite Cartoon[103][104] | | Nominasi |
| 2013 | Annie Awards | Best Animated Television Production for Children[105][106] | | Nominasi |
| Directing in an Animated Television or other Broadcast Venue Production[105][106] | Mark Caballero
Seamus Walsh
for "It's a SpongeBob Christmas!" | Nominasi |
| Character Animation in an Animated Television or other Broadcast Venue Production[105][106] | Dan Driscoll
for "It's a SpongeBob Christmas!" | Menang |
Savelen Forrest
for "It's a SpongeBob Christmas!" | Nominasi |
| Daytime Emmy Awards | Outstanding Achievement in Sound Editing - Animation[107] | | Menunggu |
| Golden Reel Awards | Best Sound Editing - Sound Effects, Foley, Dialogue and ADR Animation in Television[108][109] | "It's a SpongeBob Christmas!" | Nominasi |
| "Gary's New Toy" | Nominasi |
| Kids' Choice Awards | Favorite Cartoon[110] | | Menang |
